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Indonesian endemic species illustration showcasing unique wildlife found only in Indonesia.

Endemic Species of Indonesia

Indonesia’s national biodiversity-status report provides country-scale endemic-fauna counts for seven taxonomic groups, while also stating that national invertebrate coverage remains uneven. The figures below therefore remain source-defined group totals rather than a synthetic all-taxa endemic total. [S1]

MeasureValue
Endemic mammals421 species [S1]
Endemic share of mammals53.6% [S1]
Endemic birds577 species [S1]
Endemic share of birds30.6% [S1]
Endemic amphibians180 species [S1]
Endemic share of amphibians44.7% [S1]
Endemic reptiles264 species [S1]
Endemic share of reptiles33.4% [S1]
Endemic fishes452 species [S1]
Endemic share of fishes36.3% [S1]
Endemic bivalve molluscs706 species [S1]
Endemic share of bivalve molluscs38.1% [S1]
Endemic freshwater crustaceans241 species [S1]
Endemic share of freshwater crustaceans76.03% [S1]

Dataset boundaries

The national table reports 577 endemic birds [S1], while Burung Indonesia’s 2024 treatment reports 542 species restricted to Indonesia’s administrative territory under its HBW/BirdLife International 2023 taxonomic basis. [S2] The two counts should be kept separate because their taxonomic and source treatments are not identical.

No single number on this page is presented as the total endemic biota of Indonesia. Plants, vertebrates, fishes and invertebrates are covered by different datasets, taxonomic backbones and update cycles.

Regional pattern in one national bird dataset

Within the Bappenas–BRIN national table, endemic-bird records are concentrated in Sulawesi, Maluku and Nusa Tenggara. The Java figure explicitly includes Bali. [S1]

RegionEndemic bird species
Sulawesi150
Maluku126
Nusa Tenggara90
Java including Bali78
Papua72
Sumatra58
Kalimantan3

Burung Indonesia uses a different 2024 bird treatment: it reports 169 endemic species in Sulawesi and six in Kalimantan within a 542-species national endemic set. [S2] Those values are not substituted into the Bappenas–BRIN regional series above.

Verified species-level checklist coverage

Verified species-level records shown: 174

This is the row count of the source-bounded checklists displayed on this page: 145 fishes, 16 mammals, three birds, five amphibian/reptile records and five plants. It is not a national all-taxa endemic-species total.

FishBase endemic-fish checklist

FishBase’s Indonesia endemic filter lists 145 species in the source snapshot used for this checklist. [S3] Because the country checklist is dynamic, this table is treated as a source-bounded checklist rather than a fixed national total.

No.Scientific name
1Adrianichthys kruyti
2Adrianichthys oophorus
3Adrianichthys poptae
4Adrianichthys roseni
5Apristurus sibogae
6Barbodes microps
7Betta edithae
8Betta foerschi
9Betta schalleri
10Bostrychus aruensis
11Callionymus amboina
12Callionymus bleekeri
13Chaetodontoplus dimidiatus
14Chilatherina bleheri
15Chilatherina sentaniensis
16Chromis athena
17Chromis unipa
18Chromobotia macracanthus
19Chrysiptera pricei
20Cirrhilabrus adornatus
21Clarias pseudonieuhofii
22Doryichthys heterosoma
23Ecsenius ops
24Fowleria amblyuroptera
25Glossamia beauforti
26Glossamia timika
27Glossogobius flavipinnis
28Glossogobius hoesei
29Glossogobius intermedius
30Glossogobius mahalonensis
31Glossogobius matanensis
32Glossolepis incisa
33Glossolepis pseudoincisa
34Glyptothorax schmidti
35Grallenia nigrifasciata
36Grallenia ornata
37Grallenia sundaensis
38Gyrinocheilus pustulosus
39Helcogramma kranos
40Helcogramma solorensis
41Helcogramma vulcana
42Hemirhamphodon kapuasensis
43Hemitrygon longicauda
44Hephaestus lineatus
45Hephaestus roemeri
46Homalopterula gymnogaster
47Johnius hypostoma
48Kalyptatherina helodes
49Kanekonia pelta
50Leiocassis rudicula
51Lobocheilos kajanensis
52Lobocheilos lehat
53Lobocheilos schwanenfeldii
54Marosatherina ladigesi
55Melanotaenia ajamaruensis
56Melanotaenia angfa
57Melanotaenia arfakensis
58Melanotaenia boesemani
59Melanotaenia catherinae
60Melanotaenia corona
61Melanotaenia ericrobertsi
62Melanotaenia flavipinnis
63Melanotaenia fredericki
64Melanotaenia irianjaya
65Melanotaenia japenensis
66Melanotaenia laticlavia
67Melanotaenia maylandi
68Melanotaenia misoolensis
69Melanotaenia ogilbyi
70Melanotaenia parva
71Melanotaenia praecox
72Melanotaenia salawati
73Melanotaenia vanheurni
74Melanotaenia veoliae
75Melanotaenia wanoma
76Microphis caudocarinatus
77Mugilogobius amadi
78Mugilogobius latifrons
79Mugilogobius rexi
80Mugilogobius sarasinorum
81Nemipterus balinensis
82Nemipterus gracilis
83Nomorhamphus celebensis
84Nomorhamphus megarrhamphus
85Nomorhamphus weberi
86Oryzias bonneorum
87Oryzias celebensis
88Oryzias eversi
89Oryzias kalimpaaensis
90Oryzias marmoratus
91Oryzias matanensis
92Oryzias nebulosus
93Oryzias nigrimas
94Oryzias orthognathus
95Oryzias profundicola
96Oryzias sarasinorum
97Osteochilus kappenii
98Ostorhinchus microspilos
99Oxyeleotris stagnicola
100Oxyeleotris wisselensis
101Pachyula conorhynchus
102Pangasius mahakamensis
103Parambassis altipinnis
104Parascolopsis qantasi
105Paratherina cyanea
106Paratherina labiosa
107Paratherina striata
108Paratherina wolterecki
109Parosphromenus deissneri
110Parupeneus inayatae
111Platygobiopsis akihito
112Pomacentrus fakfakensis
113Pomacentrus javanicus
114Pomacentrus xanthosternus
115Poropuntius tawarensis
116Pseudanthias mica
117Pseudobagarius meridionalis
118Pseudochromis ammeri
119Pseudogobiopsis tigrellus
120Pseudomugil reticulatus
121Pseudomystus moeschii
122Pterapogon kauderni
123Rasbora baliensis
124Rasbora subtilis
125Rasbora tawarensis
126Sargocentron shimizui
127Sicyopterus hageni
128Silurichthys citatus
129Stenogobius lachneri
130Stiphodon annieae
131Sueviota bryozophila
132Telmatherina abendanoni
133Telmatherina antoniae
134Telmatherina bonti
135Telmatherina celebensis
136Telmatherina obscura
137Telmatherina opudi
138Telmatherina prognatha
139Telmatherina sarasinorum
140Telmatherina wahjui
141Urolophus javanicus
142Urolophus kaianus
143Variichthys jamoerensis
144Zenarchopterus alleni
145Zenarchopterus ornithocephala

FishBase includes Urolophus javanicus in the Indonesia endemic checklist. Its species account records an IUCN Red List status of Extinct (EX), assessed on 31 March 2023. [S4]

Taxonomy-controlled records from a Sulawesi mammal table

The Sulawesi biodiversity-status report lists 18 threatened endemic mammals in Table 4.12. [S5] Sixteen accepted species-rank records are retained below after removing two rows that conflict with current specialist taxonomy or country-range treatment.

No.Scientific name
1Ailurops melanotis
2Acerodon humilis
3Tarsius niemitzi
4Tarsius pelengensis
5Tarsius sangirensis
6Tarsius tarsier
7Tarsius tumpara
8Macaca brunnescens
9Babyrousa togeanensis
10Prosciurillus rosenbergii
11Bunomys andrewsi
12Melomys caurinus
13Melomys talaudium
14Rattus facetus
15Rattus koopmani
16Rattus pelurus

The Togian macaque taxon listed as Macaca togeanus in the regional report is not counted separately because the Mammal Diversity Database places togeanus names in the synonymy of accepted Macaca tonkeana. [S6] Cheiromeles parvidens is also excluded from the strict Indonesia-endemic subset because the current Mammal Diversity Database lists its country distribution as the Philippines and Indonesia. [S7]

Bird additions with Indonesia-only ranges

Burung Indonesia’s 2024 update identifies four newly added birds as endemic in its treatment. Three have source-stated ranges confined to Indonesian islands and are retained here. [S2]

Scientific nameNative endemic range
Macropygia cinnamomeaEnggano Island, Bengkulu
Ninox rotiensisRote Island, East Nusa Tenggara
Zosterops dehaaniMorotai Island, North Maluku

Ninox plesseni is not included in this strict-country subset because the same source gives its range as Alor and nearby Pantar and Atauro, extending beyond the Indonesia-only range criterion used here. [S2]

Range-verified amphibians and reptiles

These records use specialist amphibian and reptile databases that explicitly place the native range within Indonesia.

GroupScientific nameNative endemic range
AmphibianLeptophryne cruentataMount Pangrango, Mount Gedeh and Curug Luhur, West Java [S8]
AmphibianLimnonectes larvaepartusNorthern peninsula and west coast of Sulawesi east to the central core [S9]
ReptileVaranus komodoensisKomodo, Padar, Rinca and Flores, Lesser Sunda region [S10]
ReptileLeucocephalon yuwonoiSulawesi [S11]
ReptileBronchocela celebensisSulawesi [S12]

Endemic plants under the current Kew backbone

The plant records below use accepted names and native ranges in Plants of the World Online rather than cultivated or introduced occurrences.

Scientific nameNative endemic range
Hopea celebica BurckSulawesi [S13]
Rubroshorea selanica (DC.) P.S.Ashton & J.Heck.Maluku [S14]
Vatica bantamensis (Hassk.) Benth. & Hook.f. ex Miq.West Java [S15]
Vatica teysmanniana BurckEast Sumatra [S16]
Amorphophallus titanum (Becc.) Becc.West Sumatra [S17]

Rubroshorea selanica is the accepted Kew name; Shorea selanica is treated as a synonym in the same taxonomic record. [S14]

Range and taxonomy controls

  • Endemism is based on natural native distribution. Introduced, cultivated, naturalized and translocated records do not enlarge a species’ native range.
  • The checklist uses species-rank records; subspecies, varieties and synonyms are not counted as separate species.
  • Counts from different datasets are not added to create an Indonesia-wide endemic total.

Rafflesia arnoldi is often associated with Indonesia, but Kew gives its native range as southwestern Sumatra and Borneo, including western Sarawak and western Kalimantan. It is therefore not treated here as a species endemic only to Indonesia. [S18]

Sources

[S1] ↩ Bappenas / BRIN — Status Kekinian Keanekaragaman Hayati Indonesia 2024. National biodiversity-status report; first printed August 2025.

[S2] ↩ Burung Indonesia — Status Burung di Indonesia 2024. Bird diversity, taxonomy and country-endemism update using the HBW/BirdLife International 2023 taxonomic basis.

[S3] ↩ FishBase — List of Endemic Fishes reported from Indonesia. Dynamic Indonesia country checklist filtered for endemic fishes.

[S4] ↩ FishBase — Urolophus javanicus. Species account with Java distribution and IUCN Extinct status.

[S5] ↩ Bappenas / BRIN — Status Keanekaragaman Hayati Ekoregion Sulawesi 2024. Sulawesi biodiversity-status report, including Table 4.12 on threatened endemic mammals.

[S6] ↩ Mammal Diversity Database — Macaca tonkeana. Current accepted mammal treatment; places Togian togeanus names in the synonymy of Macaca tonkeana.

[S7] ↩ Mammal Diversity Database — Cheiromeles parvidens. Current mammal species account; country distribution includes the Philippines and Indonesia.

[S8] ↩ Amphibian Species of the World — Leptophryne cruentata. Accepted species account; endemic to Indonesia and known from western Java localities.

[S9] ↩ Amphibian Species of the World — Limnonectes larvaepartus. Accepted species account; endemic to Indonesia on Sulawesi.

[S10] ↩ The Reptile Database — Varanus komodoensis. Species account with native distribution in the Lesser Sunda region of Indonesia.

[S11] ↩ The Reptile Database — Leucocephalon yuwonoi. Species account with distribution in Sulawesi, Indonesia.

[S12] ↩ The Reptile Database — Bronchocela celebensis. Species account with distribution in Sulawesi, Indonesia.

[S13] ↩ Plants of the World Online — Hopea celebica Burck. Accepted name under the 2026 Kew backbone; native range Sulawesi.

[S14] ↩ Plants of the World Online — Rubroshorea selanica (DC.) P.S.Ashton & J.Heck.. Accepted name under the 2026 Kew backbone; native range Maluku.

[S15] ↩ Plants of the World Online — Vatica bantamensis (Hassk.) Benth. & Hook.f. ex Miq.. Accepted name under the 2026 Kew backbone; native range western Java.

[S16] ↩ Plants of the World Online — Vatica teysmanniana Burck. Accepted name under the 2026 Kew backbone; native range eastern Sumatra.

[S17] ↩ Plants of the World Online — Amorphophallus titanum (Becc.) Becc.. Accepted name under the 2026 Kew backbone; native range western Sumatra.

[S18] ↩ Plants of the World Online — Rafflesia arnoldi R.Br.. Accepted species account; native range extends across Sumatra and Borneo, including western Sarawak.